A design of LEGO-like construction set that allows assembling of different linear arrays of three-dimensional (3D) cavities and qubits for circuit quantum electrodynamics (cQED) experiments has been developed. A study of electromagnetic properties of qubit-3D cavity arrays has been done by using high frequency structure simulator (HFSS). A technique for estimation of inter-qubit coupling strength between qubits embedded in different cavities of cavity array, which combines Hamiltonian description of the system with simple HFSS simulations, has been proposed. A good agreement between inter-qubit coupling strengths, which were obtained by using this technique and directly from simulation, demonstrates the suitability of the method for more complex qubit-cavity arrays where usage of finite-element electromagnetic simulators is limited.