q-bio.QM

Papers

• A resource-frugal probabilistic dictionary and applications in bioinformatics (2017)
  Camille Marchet et al.
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• Querying structural and functional niches on spatial transcriptomics data (2026)
  Mo Chen et al.
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• Hashing for Protein Structure Similarity Search (2024)
  Jin Han et al.
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• FragmentNet: Adaptive Graph Fragmentation for Graph-to-Sequence Molecular Representation Learning (2026)
  Ankur Samanta et al.
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• BioArc: Discovering Optimal Neural Architectures for Biological Foundation Models (2026)
  Yi Fang et al.
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• Mechanistic Interpretability of Antibody Language Models Using SAEs (2026)
  Rebonto Haque et al.
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• $\textit{BlockFormer}$ : Transformer-based inference from interaction maps (2026)
  Elo\"ise Touron et al.
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• Topological Signal Processing: An Application-Oriented Tutorial (2026)
  Flavia Petruso et al.
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• FederatedRSF : Federated Random Survival Forests for Partially Overlapping Medical Data (2026)
  Maryam Moradpour et al.
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• Uncertainty-aware classification and triage of structural heart disease using electrocardiography and echocardiography metrics (2026)
  Mitchel J. Colebank
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• Learning dynamical systems with biochemically informed neural ordinary differential equations (2026)
  Luis L. Fonseca et al.
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• GEESE: Genotype-aware End-to-End Spatio-temporal Embedding for Behavioral Phenotyping (2026)
  Yiran Ding et al.
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• Multimodality Stacking with Blockwise missing values and application to the PIONeeR biomarkers study for prediction of resistance to immunotherapy (2026)
  Mohamed Boussena et al.
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• ViroBench: Benchmarking Nucleotide Foundation Models on Viral Genomics Tasks (2026)
  Dongxin Ye et al.
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• What Molecular Structure Cannot Tell Us: A Taxonomy of Explainability Gaps in GNN-Based Drug Toxicity Prediction (2026)
  Juergen Dietrich
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• Self-Improvement Imitation with Biologically Guided Search for Protein Design Under Oracle Budgets (2026)
  Ashima Khanna et al.
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• Molecular Lead Optimization via Agentic Tool Planning (2026)
  Lingxiao Li et al.
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• Computational Modeling of Antibody-Antigen Complexes: PLM-Based and MSA-Based Approaches (2026)
  Xiao Luo
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• Mixing Vector Model for Copolymer Inference via Mixed Integer Linear Programming (2026)
  Jianshen Zhu et al.
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• FPLIER: Federated Pathway-Level Information Extractor (2026)
  Daniele Malpetti et al.
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• Digitally enriching a screening population for pancreatic cancer using routine blood-based measures and clinical histories (2026)
  Chris Varghese et al.
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