q-bio.BM

Papers

• Fixed-Length Protein Embeddings using Contextual Lenses (2020)
  Amir Shanehsazzadeh et al.
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• MolPIF: A Parameter Interpolation Flow Model for Molecule Generation (2026)
  Yaowei Jin et al.
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• Calibrating Generative Models to Distributional Constraints (2026)
  Henry D. Smith et al.
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• Multi-Alignment Contrastive Learning for Enzyme--Reaction Retrieval (2026)
  Gengmo Zhou et al.
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• A Systematic Evaluation of Co-folding Model Representations for Small-Molecule Learning (2026)
  Hyosoon Jang et al.
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• Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design (2026)
  Ziyi Yang et al.
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• Induction Meets Biology: Mechanisms of Repeat Detection in Protein Language Models (2026)
  Gal Pomerants et al.
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• Learning Protein Structure-Function Relationships through Knowledge-guided Representation Decomposition (2026)
  Mingqing Wang et al.
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• Multimodal Alignment and Preference Optimization for Zero-Shot Conditional RNA Generation (2026)
  Roman Klypa et al.
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• MetaboKG: An Analysis-centric Knowledge Graph Framework for Untargeted Metabolomics (2026)
  Matthieu F\'eraud et al.
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• Co-folding model guided by structural proteomics (2026)
  Alon Shtrikman et al.
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• PROTOCOL: Late Interaction Retrieval for Protein Homolog Search (2026)
  Gabrielle Cohn et al.
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