Abstract
Distance geometry explores the properties of distance spaces that can be exactly represented as the pairwise Euclidean distances between points in $\mathbb{R}^d$ ($d \geq 1$), or equivalently, distance spaces that can be isometrically embedded in $\mathbb{R}^d$. In this work, we investigate whether a distance space can be isometrically embedded in $\mathbb{R}^d$ after applying a limited number of modifications. Specifically, we focus on two types of modifications: outlier deletion (removing points) and distance modification (adjusting distances between points). The central problem, Euclidean Embedding Editing (EEE), asks whether an input distance space on $n$ points can be transformed, using at most $k$ modifications, into a space that is isometrically embeddable in $\mathbb{R}^d$. We present several fixed-parameter tractable (FPT) and approximation algorithms for this problem. Our first result is an algorithm that solves EEE in time $(dk)^{\mathcal{O}(d+k)} + n^{\mathcal{O}(1)}$. The core subroutine of this algorithm, which is of independent interest, is a polynomial-time method for compressing the input distance space into an equivalent instance of EEE with $\mathcal{O}((dk)^2)$ points. For the special but important case of EEE where only outlier deletions are allowed, we improve the parameter dependence of the FPT algorithm and obtain a running time of $\min\{(d+3)^k, 2^{d+k}\} \cdot n^{\mathcal{O}(1)}$. Additionally, we provide an FPT-approximation algorithm for this problem, which outputs a set of at most $2 \cdot {\rm OPT}$ outliers in time $2^d \cdot n^{\mathcal{O}(1)}$. This 2-approximation algorithm improves upon the previous $(3+\varepsilon)$-approximation algorithm by Sidiropoulos, Wang, and Wang [SODA '17]. Furthermore, we complement our algorithms with hardness results motivating our choice of parameterizations.