Abstract
We investigate the physical implementation of Shor's factorization algorithm on a Josephson charge qubit register. While we pursue a universal method to factor a composite integer of any size, the scheme is demonstrated for the number 21. We consider both the physical and algorithmic requirements for an optimal implementation when only a small number of qubits is available. These aspects of quantum computation are usually the topics of separate research communities; we present a unifying discussion of both of these fundamental features bridging Shor's algorithm to its physical realization using Josephson junction qubits. In order to meet the stringent requirements set by a short decoherence time, we accelerate the algorithm by decomposing the quantum circuit into tailored two- and three-qubit gates and we find their physical realizations through numerical optimization.