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From Tool Orchestration To Code Execution: A Study Of MCP Design Choices

·2026

Abstract

Model Context Protocols (MCPs) provide a unified platform for agent systems to discover, select, and orchestrate tools across heterogeneous execution environments. As MCP-based systems scale to incorporate larger tool catalogs and multiple concurrently connected MCP servers, traditional tool-by-tool invocation increases coordination overhead, fragments state management, and limits support for wide-context operations. To address these scalability challenges, recent MCP designs have incorporated code execution as a first-class capability, an approach called Code Execution MCP (CE-MCP). This enables agents to consolidate complex workflows, such as SQL querying, file analysis, and multi-step data transformations, into a single program that executes within an isolated runtime environment. In this work, we formalize the architectural distinction between context-coupled (traditional) and context-decoupled (CE-MCP) models, analyzing their fundamental scalability trade-offs. Using the MCP-Bench

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