ProteinGym

Papers using ProteinGym (16)

A Diffusion Model to Shrink Proteins While Maintaining Their Function2025 · 2 citesMetalic: Meta-Learning In-Context with Protein Language Models2024 · 3 citesAugmenting Biological Fitness Prediction Benchmarks with Landscapes Features from GraphFLA2025 · 1 citesTriFit: Trimodal Fusion with Protein Dynamics for Mutation Fitness Prediction2026Reverse Distillation: Consistently Scaling Protein Language Model Representations2026Binary Latent Protein Fitness Landscapes for Quantum Annealing Optimization2026Rank-and-Reason: Multi-Agent Collaboration Accelerates Zero-Shot Protein Mutation Prediction2026No Generation without Representation: Efficient Causal Protein Language Models Enable Zero-Shot Fitness Estimation2026Evolutionary Profiles for Protein Fitness Prediction2025A Matrix Variational Auto-Encoder for Variant Effect Prediction in Pharmacogenes2025Protein Language Model Zero-Shot Fitness Predictions are Improved by Inference-only Dropout2025Exploring zero-shot structure-based protein fitness prediction2025Exploring Large Protein Language Models in Constrained Evaluation Scenarios within the FLIP Benchmark2025Multi-Scale Representation Learning for Protein Fitness Prediction2024 · 14 citesFine-tuning Protein Language Models with Deep Mutational Scanning improves Variant Effect Prediction2024 · 11 citesRetrieval-Enhanced Mutation Mastery: Augmenting Zero-Shot Prediction of Protein Language Model2024 · 4 cites