Protein Data Bank (PDB)

The Protein Data Bank (PDB) is a curated repository of three-dimensional structural data of proteins, used to evaluate the accuracy of protein secondary structure prediction methods.

Papers using Protein Data Bank (PDB) (16)

ESMDisPred: A Structure-Aware CNN-Transformer Architecture for Intrinsically Disordered Protein Prediction2026 · 1 citesAlphaFold Database Debiasing for Robust Inverse Folding2025 · 1 citesProtein Structure Prediction: From Homologue Identification to Accurate 3d Modelling Using an Ultra-Fast Search Engine2026Protein Secondary Structure Prediction Using Soft Computing Techniques.2026HBAT 2: A Python Package to Analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures2026Developing a Machine-Learning Interatomic Potential for Non-Covalent Interactions in Proteins2026ReACT-Drug: Reaction-Template Guided Reinforcement Learning for de novo Drug Design2025XAI-Driven Deep Learning for Protein Sequence Functional Group Classification2025Aligning Proteins and Language: A Foundation Model for Protein Retrieval2025PPDiff: Diffusing in Hybrid Sequence-Structure Space for Protein-Protein Complex Design2025Physics-informed generative model for drug-like molecule conformers2024 · 6 citesDynamic PDB: A New Dataset and a SE(3) Model Extension by Integrating Dynamic Behaviors and Physical Properties in Protein Structures2024 · 6 citesPepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding2024 · 3 citesDiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of C{\alpha} Protein Traces2023Advanced atom-level representations for protein flexibility prediction utilizing graph neural networks2024Quadratic unconstrained binary optimization and constraint programming approaches for lattice-based cyclic peptide docking2024