Gene Ontology

Gene Ontology is a comprehensive framework that provides structured vocabulary to describe gene functions, which is used to evaluate the biological organization and feature representation in models like Geneformer and scGPT.

Papers using Gene Ontology (2)

Sparse autoencoders reveal organized biological knowledge but minimal regulatory logic in single-cell foundation models: a comparative atlas of Geneformer and scGPT2026Evaluation of large language models for discovery of gene set function2023 · 9 cites