BindingDB

BindingDB is a database that contains viral protein-ligand binding measurements, which is used to evaluate and benchmark computational tools for predicting binding affinities in antiviral drug discovery.

Papers using BindingDB (9)

EquiCPI: SE(3)-Equivariant Geometric Deep Learning for Structure-Aware Prediction of Compound-Protein Interactions2025 · 2 citesStructure-Aware Contrastive Learning with Fine-Grained Binding Representations for Drug Discovery2025 · 1 citesCOMET:Combined Matrix for Elucidating Targets2024 · 1 citesStructure-free drug–target affinity prediction using protein and molecule language models2026Benchmarking open-source tools for in silico antiviral drug discovery2026BioBridge: Bridging Proteins and Language for Enhanced Biological Reasoning with LLMs2026Decoding the dark proteome: Deep learning-enabled discovery of druggable enzymes in Wuchereria bancrofti2025Repurformer: Transformers for Repurposing-Aware Molecule Generation2024 · 1 citesScreening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-kB receptors based on machine learning and molecular docking2024