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• Deep Lead Optimization: Leveraging Generative AI for Structural Modification
  2024 · 38 citations
• DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding
  2022 · 33 citations
• Protein Language Models and Structure Prediction: Connection and Progression
  2022 · 21 citations
• Predicting drug response of tumors from integrated genomic profiles by deep neural networks
  2018 · 20 citations
• MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding
  2024 · 10 citations
• A Survey on Protein Representation Learning: Retrospect and Prospect
  2023 · 8 citations
• PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
  2024 · 8 citations
• Data-Efficient Protein 3D Geometric Pretraining via Refinement of Diffused Protein Structure Decoy
  2023 · 5 citations
• PPFlow: Target-aware Peptide Design with Torsional Flow Matching
  2024 · 4 citations
• Enhancing Protein Predictive Models via Proteins Data Augmentation: A Benchmark and New Directions
  2024 · 3 citations
• Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction
  2023 · 1 citations
• VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
  2024 · 1 citations
• Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges
  2025